Protein–RNA interactions for Protein: Q99KU0

Vmp1, Vacuole membrane protein 1, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vmp1Q99KU0 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gm11779-201ENSMUST00000118541 368 ntBASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gm27300-201ENSMUST00000184085 97 ntBASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gm27335-201ENSMUST00000184758 97 ntBASIC14.16□□□□□ -0.14
Vmp1Q99KU0 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vmp1Q99KU0 Gm5366-201ENSMUST00000215494 1338 ntBASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Vmp1Q99KU0 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Gm5264-201ENSMUST00000190584 848 ntBASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Gm43868-201ENSMUST00000205187 2114 ntBASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Vmp1Q99KU0 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Vmp1Q99KU0 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Vmp1Q99KU0 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Vmp1Q99KU0 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vmp1Q99KU0 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Vmp1Q99KU0 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.13□□□□□ -0.15
Vmp1Q99KU0 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms