Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
Brf1Q8CFK2 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Gm13332-201ENSMUST00000120451 1398 ntBASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Gm5479-201ENSMUST00000160578 435 ntBASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Gm2213-201ENSMUST00000197485 688 ntBASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Brf1Q8CFK2 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Gm13365-201ENSMUST00000121188 973 ntBASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Gm12017-201ENSMUST00000122453 1003 ntBASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Gm38058-201ENSMUST00000194323 4368 ntBASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Brf1Q8CFK2 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Gm45098-201ENSMUST00000207179 657 ntBASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Gm18057-201ENSMUST00000208220 503 ntBASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Brf1Q8CFK2 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Gm37297-201ENSMUST00000192974 2384 ntBASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Gm11543-201ENSMUST00000120758 370 ntBASIC17.66■□□□□ 0.42
Brf1Q8CFK2 Mir1895-201ENSMUST00000122615 79 ntBASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms