Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Gm5177-201ENSMUST00000183092 997 ntBASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.32■□□□□ 0.36
Nup88Q8CEC0 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Gm14701-201ENSMUST00000117156 348 ntBASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Gm27301-201ENSMUST00000184012 127 ntBASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 AC167013.2-201ENSMUST00000228520 2684 ntBASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Nup88Q8CEC0 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Gm15427-201ENSMUST00000117288 531 ntBASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Gm23547-201ENSMUST00000158210 271 ntBASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Nup88Q8CEC0 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.3■□□□□ 0.36
Nup88Q8CEC0 AC148324.1-201ENSMUST00000219034 4240 ntBASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Gm42632-201ENSMUST00000201707 2411 ntBASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Gm10576-201ENSMUST00000191927 825 ntBASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Nup88Q8CEC0 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Nup88Q8CEC0 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms