Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 AC154767.3-201ENSMUST00000225150 1342 ntBASIC17.29■□□□□ 0.36
Trim56Q80VI1 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Gm7336-201ENSMUST00000107041 1232 ntBASIC17.29■□□□□ 0.36
Trim56Q80VI1 Gm18049-201ENSMUST00000208909 581 ntBASIC17.29■□□□□ 0.36
Trim56Q80VI1 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim56Q80VI1 Gm37736-201ENSMUST00000193564 2802 ntBASIC17.29■□□□□ 0.36
Trim56Q80VI1 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Gm13823-201ENSMUST00000119930 345 ntBASIC17.28■□□□□ 0.36
Trim56Q80VI1 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim56Q80VI1 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC17.27■□□□□ 0.36
Trim56Q80VI1 Gm37277-201ENSMUST00000194052 1111 ntBASIC17.27■□□□□ 0.36
Trim56Q80VI1 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim56Q80VI1 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim56Q80VI1 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim56Q80VI1 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim56Q80VI1 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Gm15693-201ENSMUST00000120470 637 ntBASIC17.26■□□□□ 0.35
Trim56Q80VI1 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Gm9182-201ENSMUST00000217829 639 ntBASIC17.26■□□□□ 0.35
Trim56Q80VI1 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim56Q80VI1 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Gm9856-201ENSMUST00000217077 2578 ntBASIC17.25■□□□□ 0.35
Trim56Q80VI1 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim56Q80VI1 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms