Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC18.93■□□□□ 0.62
Trim28Q62318 Gm33320-201ENSMUST00000192232 530 ntBASIC18.93■□□□□ 0.62
Trim28Q62318 AC154806.6-201ENSMUST00000228192 202 ntBASIC18.93■□□□□ 0.62
Trim28Q62318 Gm20445-201ENSMUST00000061905 565 ntBASIC18.93■□□□□ 0.62
Trim28Q62318 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trim28Q62318 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Trim28Q62318 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trim28Q62318 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Trim28Q62318 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Gm15460-201ENSMUST00000118147 391 ntBASIC18.92■□□□□ 0.62
Trim28Q62318 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
Trim28Q62318 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Trim28Q62318 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
Trim28Q62318 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Trim28Q62318 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Trim28Q62318 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trim28Q62318 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Trim28Q62318 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC18.91■□□□□ 0.62
Trim28Q62318 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC18.91■□□□□ 0.62
Trim28Q62318 AC155729.1-201ENSMUST00000227758 544 ntBASIC18.91■□□□□ 0.62
Trim28Q62318 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim28Q62318 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trim28Q62318 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trim28Q62318 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trim28Q62318 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trim28Q62318 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
Trim28Q62318 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim28Q62318 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Trim28Q62318 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
Trim28Q62318 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC18.9■□□□□ 0.62
Trim28Q62318 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Gm12585-201ENSMUST00000117307 290 ntBASIC18.9■□□□□ 0.62
Trim28Q62318 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC18.9■□□□□ 0.62
Trim28Q62318 Gm42612-201ENSMUST00000197986 623 ntBASIC18.9■□□□□ 0.62
Trim28Q62318 Gm43170-201ENSMUST00000199827 612 ntBASIC18.9■□□□□ 0.62
Trim28Q62318 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Trim28Q62318 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC18.9■□□□□ 0.62
Trim28Q62318 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Trim28Q62318 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim28Q62318 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
Trim28Q62318 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trim28Q62318 AC154231.1-201ENSMUST00000220564 2175 ntBASIC18.89■□□□□ 0.62
Trim28Q62318 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trim28Q62318 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim28Q62318 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms