Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Gm23547-201ENSMUST00000158210 271 ntBASIC17.25■□□□□ 0.35
Limch1Q3UH68 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.25■□□□□ 0.35
Limch1Q3UH68 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Lpgat1-201ENSMUST00000110855 7233 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Trav13-3-201ENSMUST00000117226 336 ntBASIC17.24■□□□□ 0.35
Limch1Q3UH68 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC17.24■□□□□ 0.35
Limch1Q3UH68 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Gm37297-201ENSMUST00000192974 2384 ntBASIC17.24■□□□□ 0.35
Limch1Q3UH68 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Limch1Q3UH68 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.23■□□□□ 0.35
Limch1Q3UH68 Gm13365-201ENSMUST00000121188 973 ntBASIC17.23■□□□□ 0.35
Limch1Q3UH68 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.23■□□□□ 0.35
Limch1Q3UH68 Gm5312-201ENSMUST00000203728 547 ntBASIC17.23■□□□□ 0.35
Limch1Q3UH68 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Gm13332-201ENSMUST00000120451 1398 ntBASIC17.23■□□□□ 0.35
Limch1Q3UH68 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Ap5m1-205ENSMUST00000227431 3757 ntBASIC17.23■□□□□ 0.35
Limch1Q3UH68 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Limch1Q3UH68 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Gm44335-201ENSMUST00000196879 141 ntBASIC17.22■□□□□ 0.35
Limch1Q3UH68 Gm44297-201ENSMUST00000198304 141 ntBASIC17.22■□□□□ 0.35
Limch1Q3UH68 Gm44346-201ENSMUST00000198851 141 ntBASIC17.22■□□□□ 0.35
Limch1Q3UH68 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Limch1Q3UH68 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms