Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm11814-201ENSMUST00000119515 929 ntBASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Gm43179-201ENSMUST00000198797 275 ntBASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Gm7561-201ENSMUST00000211203 886 ntBASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 AC125117.1-201ENSMUST00000228121 468 ntBASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Ddb1Q3U1J4 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Ddb1Q3U1J4 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.54
Ddb1Q3U1J4 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Gm8652-201ENSMUST00000181363 964 ntBASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Gm5425-201ENSMUST00000214125 459 ntBASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC18.45■□□□□ 0.54
Ddb1Q3U1J4 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Gm21009-201ENSMUST00000197169 1669 ntBASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Gm7287-201ENSMUST00000205267 602 ntBASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Aqp8-201ENSMUST00000033023 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 AL645783.1-201ENSMUST00000221416 1832 ntBASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Ddb1Q3U1J4 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Gm27847-201ENSMUST00000183711 107 ntBASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Gm27375-201ENSMUST00000183799 107 ntBASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Gm6091-201ENSMUST00000098307 165 ntBASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 51.9 ms