Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm30238-201ENSMUST00000195528 2603 ntBASIC11.88□□□□□ -0.51
Cdx1P18111 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Cdx1P18111 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
Cdx1P18111 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Cdx1P18111 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC11.87□□□□□ -0.51
Cdx1P18111 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Gm42928-201ENSMUST00000197338 3339 ntBASIC11.87□□□□□ -0.51
Cdx1P18111 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Cdx1P18111 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC11.87□□□□□ -0.51
Cdx1P18111 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC11.87□□□□□ -0.51
Cdx1P18111 Gm11452-201ENSMUST00000122376 690 ntBASIC11.87□□□□□ -0.51
Cdx1P18111 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC11.87□□□□□ -0.51
Cdx1P18111 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC11.87□□□□□ -0.51
Cdx1P18111 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC11.87□□□□□ -0.51
Cdx1P18111 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Cdx1P18111 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Cdx1P18111 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC11.87□□□□□ -0.51
Cdx1P18111 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Cdx1P18111 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
Cdx1P18111 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC11.87□□□□□ -0.51
Cdx1P18111 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Cdx1P18111 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
Cdx1P18111 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC11.86□□□□□ -0.51
Cdx1P18111 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC11.86□□□□□ -0.51
Cdx1P18111 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC11.86□□□□□ -0.51
Cdx1P18111 Gm9449-201ENSMUST00000207265 1011 ntBASIC11.86□□□□□ -0.51
Cdx1P18111 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC11.86□□□□□ -0.51
Cdx1P18111 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Zfp264-201ENSMUST00000208656 1563 ntBASIC11.86□□□□□ -0.51
Cdx1P18111 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Fam83e-201ENSMUST00000129507 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC11.86□□□□□ -0.51
Cdx1P18111 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Cdx1P18111 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC11.86□□□□□ -0.51
Cdx1P18111 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Cdx1P18111 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Cdx1P18111 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Cdx1P18111 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC11.85□□□□□ -0.51
Cdx1P18111 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC11.85□□□□□ -0.51
Cdx1P18111 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Cdx1P18111 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC11.85□□□□□ -0.51
Cdx1P18111 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdx1P18111 Gm45638-201ENSMUST00000211507 2878 ntBASIC11.85□□□□□ -0.51
Cdx1P18111 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC11.85□□□□□ -0.51
Cdx1P18111 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Cdx1P18111 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Cdx1P18111 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Ywhab-201ENSMUST00000018470 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Cdx1P18111 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms