Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Lire1P11260 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC13.93□□□□□ -0.18
Lire1P11260 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Lire1P11260 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC13.93□□□□□ -0.18
Lire1P11260 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC13.93□□□□□ -0.18
Lire1P11260 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Lire1P11260 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
Lire1P11260 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.93□□□□□ -0.18
Lire1P11260 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Lire1P11260 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC13.93□□□□□ -0.18
Lire1P11260 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Lire1P11260 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC13.92□□□□□ -0.18
Lire1P11260 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Iws1-201ENSMUST00000025243 9613 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Atp2c1-205ENSMUST00000163879 2408 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.92□□□□□ -0.18
Lire1P11260 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Lire1P11260 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Lire1P11260 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
Lire1P11260 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC13.92□□□□□ -0.18
Lire1P11260 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC13.92□□□□□ -0.18
Lire1P11260 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.92□□□□□ -0.18
Lire1P11260 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC13.92□□□□□ -0.18
Lire1P11260 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Lire1P11260 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Lire1P11260 AC090659.1-201ENSMUST00000224334 768 ntBASIC13.92□□□□□ -0.18
Lire1P11260 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC13.92□□□□□ -0.18
Lire1P11260 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
Lire1P11260 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC13.92□□□□□ -0.18
Lire1P11260 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Rbfox2-206ENSMUST00000227314 1810 ntBASIC13.92□□□□□ -0.18
Lire1P11260 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Lire1P11260 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
Lire1P11260 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Ifngr1-201ENSMUST00000020188 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Lire1P11260 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.91□□□□□ -0.18
Lire1P11260 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Efs-202ENSMUST00000227037 2540 ntBASIC13.91□□□□□ -0.18
Lire1P11260 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Lire1P11260 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.91□□□□□ -0.18
Lire1P11260 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC13.91□□□□□ -0.18
Lire1P11260 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
Lire1P11260 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC13.91□□□□□ -0.18
Lire1P11260 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC13.91□□□□□ -0.18
Lire1P11260 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC13.91□□□□□ -0.18
Lire1P11260 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Lire1P11260 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.91□□□□□ -0.18
Lire1P11260 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Lire1P11260 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms