Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC16.97■□□□□ 0.31
Col1a1P11087 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
Col1a1P11087 Gm9816-201ENSMUST00000122292 1414 ntBASIC16.97■□□□□ 0.31
Col1a1P11087 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC16.97■□□□□ 0.31
Col1a1P11087 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
Col1a1P11087 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Gm8062-201ENSMUST00000139696 444 ntBASIC16.97■□□□□ 0.31
Col1a1P11087 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC16.97■□□□□ 0.31
Col1a1P11087 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC16.97■□□□□ 0.31
Col1a1P11087 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
Col1a1P11087 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Col1a1P11087 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.96■□□□□ 0.31
Col1a1P11087 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Gm9252-201ENSMUST00000172364 1602 ntBASIC16.96■□□□□ 0.31
Col1a1P11087 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Col1a1P11087 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.96■□□□□ 0.31
Col1a1P11087 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC16.96■□□□□ 0.31
Col1a1P11087 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Gm15240-201ENSMUST00000118156 720 ntBASIC16.96■□□□□ 0.31
Col1a1P11087 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
Col1a1P11087 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC16.96■□□□□ 0.31
Col1a1P11087 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC16.96■□□□□ 0.31
Col1a1P11087 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
Col1a1P11087 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Col1a1P11087 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.96■□□□□ 0.31
Col1a1P11087 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Gm16011-201ENSMUST00000121567 2662 ntBASIC16.96■□□□□ 0.31
Col1a1P11087 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.96■□□□□ 0.31
Col1a1P11087 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
Col1a1P11087 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Col1a1P11087 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col1a1P11087 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Col1a1P11087 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Col1a1P11087 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Col1a1P11087 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Col1a1P11087 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Col1a1P11087 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC16.95■□□□□ 0.3
Col1a1P11087 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Col1a1P11087 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col1a1P11087 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col1a1P11087 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Col1a1P11087 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Col1a1P11087 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC16.95■□□□□ 0.3
Col1a1P11087 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Dpm1-209ENSMUST00000154111 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Col1a1P11087 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Col1a1P11087 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC16.94■□□□□ 0.3
Col1a1P11087 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC16.94■□□□□ 0.3
Col1a1P11087 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Col1a1P11087 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Gm27486-201ENSMUST00000184923 80 ntBASIC16.94■□□□□ 0.3
Col1a1P11087 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC16.94■□□□□ 0.3
Col1a1P11087 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Col1a1P11087 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Col1a1P11087 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC16.94■□□□□ 0.3
Col1a1P11087 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC16.94■□□□□ 0.3
Col1a1P11087 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms