Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm28760-201ENSMUST00000185995 736 ntBASIC17.33■□□□□ 0.37
Col3a1P08121 Gm8515-201ENSMUST00000194852 576 ntBASIC17.33■□□□□ 0.37
Col3a1P08121 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC17.33■□□□□ 0.37
Col3a1P08121 Ighv1-25-201ENSMUST00000195638 345 ntBASIC17.33■□□□□ 0.37
Col3a1P08121 AC154239.3-201ENSMUST00000226933 674 ntBASIC17.33■□□□□ 0.37
Col3a1P08121 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col3a1P08121 Gm6180-201ENSMUST00000065243 498 ntBASIC17.33■□□□□ 0.37
Col3a1P08121 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col3a1P08121 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col3a1P08121 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col3a1P08121 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
Col3a1P08121 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Col3a1P08121 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col3a1P08121 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.33■□□□□ 0.36
Col3a1P08121 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.33■□□□□ 0.36
Col3a1P08121 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col3a1P08121 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC17.32■□□□□ 0.36
Col3a1P08121 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC17.32■□□□□ 0.36
Col3a1P08121 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC17.32■□□□□ 0.36
Col3a1P08121 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Col3a1P08121 Gm31326-201ENSMUST00000191856 1048 ntBASIC17.32■□□□□ 0.36
Col3a1P08121 Gm43433-201ENSMUST00000196573 481 ntBASIC17.32■□□□□ 0.36
Col3a1P08121 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC17.32■□□□□ 0.36
Col3a1P08121 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.32■□□□□ 0.36
Col3a1P08121 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col3a1P08121 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC17.31■□□□□ 0.36
Col3a1P08121 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
Col3a1P08121 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC17.31■□□□□ 0.36
Col3a1P08121 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Col3a1P08121 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Col3a1P08121 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Col3a1P08121 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC17.31■□□□□ 0.36
Col3a1P08121 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Col3a1P08121 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC17.31■□□□□ 0.36
Col3a1P08121 Ldha-ps-201ENSMUST00000119390 995 ntBASIC17.31■□□□□ 0.36
Col3a1P08121 Gm14928-201ENSMUST00000120198 477 ntBASIC17.31■□□□□ 0.36
Col3a1P08121 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col3a1P08121 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Col3a1P08121 Gm15823-201ENSMUST00000064305 670 ntBASIC17.31■□□□□ 0.36
Col3a1P08121 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Col3a1P08121 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17.31■□□□□ 0.36
Col3a1P08121 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Col3a1P08121 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col3a1P08121 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Gm13883-201ENSMUST00000150450 1404 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Actl7b-201ENSMUST00000095080 1439 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col3a1P08121 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC17.3■□□□□ 0.36
Col3a1P08121 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC17.3■□□□□ 0.36
Col3a1P08121 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC17.3■□□□□ 0.36
Col3a1P08121 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col3a1P08121 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC17.3■□□□□ 0.36
Col3a1P08121 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC17.3■□□□□ 0.36
Col3a1P08121 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC17.3■□□□□ 0.36
Col3a1P08121 Gm18624-201ENSMUST00000220966 658 ntBASIC17.3■□□□□ 0.36
Col3a1P08121 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC17.3■□□□□ 0.36
Col3a1P08121 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col3a1P08121 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col3a1P08121 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms