Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prom1O54990 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prom1O54990 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Prom1O54990 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Prom1O54990 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Prom1O54990 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC16.12■□□□□ 0.17
Prom1O54990 AC154239.3-201ENSMUST00000226933 674 ntBASIC16.12■□□□□ 0.17
Prom1O54990 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Prom1O54990 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC16.12■□□□□ 0.17
Prom1O54990 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
Prom1O54990 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Prom1O54990 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Prom1O54990 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Prom1O54990 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Prom1O54990 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC16.11■□□□□ 0.17
Prom1O54990 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC16.11■□□□□ 0.17
Prom1O54990 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC16.11■□□□□ 0.17
Prom1O54990 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.11■□□□□ 0.17
Prom1O54990 Gm9908-201ENSMUST00000211534 448 ntBASIC16.11■□□□□ 0.17
Prom1O54990 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Prom1O54990 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC16.11■□□□□ 0.17
Prom1O54990 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.11■□□□□ 0.17
Prom1O54990 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Prom1O54990 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Prom1O54990 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.1■□□□□ 0.17
Prom1O54990 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.1■□□□□ 0.17
Prom1O54990 Gm9229-201ENSMUST00000222777 126 ntBASIC16.1■□□□□ 0.17
Prom1O54990 Cdk7-205ENSMUST00000225990 1159 ntBASIC16.1■□□□□ 0.17
Prom1O54990 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Prom1O54990 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.1■□□□□ 0.17
Prom1O54990 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Gm15222-202ENSMUST00000228667 1726 ntBASIC16.1■□□□□ 0.17
Prom1O54990 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Prom1O54990 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Prom1O54990 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Prom1O54990 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prom1O54990 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Prom1O54990 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prom1O54990 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prom1O54990 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prom1O54990 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prom1O54990 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Prom1O54990 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Prom1O54990 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC16.09■□□□□ 0.17
Prom1O54990 Gm12091-201ENSMUST00000146791 830 ntBASIC16.09■□□□□ 0.17
Prom1O54990 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms