Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Gm11594-201ENSMUST00000122313 162 ntBASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Celf4-206ENSMUST00000224553 1729 ntBASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim3Q9R1R2 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim3Q9R1R2 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim3Q9R1R2 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
Trim3Q9R1R2 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Trim3Q9R1R2 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim3Q9R1R2 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.19
Trim3Q9R1R2 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Trim3Q9R1R2 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Gm43195-201ENSMUST00000200614 2332 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Gm13597-201ENSMUST00000121239 375 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Mir3113-201ENSMUST00000175478 76 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Gm37935-201ENSMUST00000192012 982 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Gm43073-201ENSMUST00000198200 1189 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Gm30437-201ENSMUST00000206086 1201 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Gm44945-201ENSMUST00000206764 1187 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Gm7229-201ENSMUST00000214719 1007 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 AC174742.1-201ENSMUST00000218272 304 ntBASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim3Q9R1R2 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim3Q9R1R2 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms