Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 AC131068.2-201ENSMUST00000226175 1453 ntBASIC17.18■□□□□ 0.34
Scn11aQ9R053 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Scn11aQ9R053 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gm18027-201ENSMUST00000218947 619 ntBASIC17.17■□□□□ 0.34
Scn11aQ9R053 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gstm1-201ENSMUST00000004140 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gm14452-201ENSMUST00000118680 1632 ntBASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gm4081-201ENSMUST00000195287 1838 ntBASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 AC154412.1-201ENSMUST00000226540 2786 ntBASIC17.17■□□□□ 0.34
Scn11aQ9R053 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Ighv8-14-201ENSMUST00000196781 358 ntBASIC17.17■□□□□ 0.34
Scn11aQ9R053 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 AC159006.1-201ENSMUST00000226396 258 ntBASIC17.17■□□□□ 0.34
Scn11aQ9R053 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Scn11aQ9R053 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC17.16■□□□□ 0.34
Scn11aQ9R053 Gm4971-201ENSMUST00000205991 1108 ntBASIC17.16■□□□□ 0.34
Scn11aQ9R053 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn11aQ9R053 Gm9115-201ENSMUST00000120192 1348 ntBASIC17.16■□□□□ 0.34
Scn11aQ9R053 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Gm5279-201ENSMUST00000199575 745 ntBASIC17.15■□□□□ 0.34
Scn11aQ9R053 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Gm5425-201ENSMUST00000214125 459 ntBASIC17.15■□□□□ 0.34
Scn11aQ9R053 AC139580.1-202ENSMUST00000223574 928 ntBASIC17.15■□□□□ 0.34
Scn11aQ9R053 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn11aQ9R053 Fbxl12-205ENSMUST00000140702 1555 ntBASIC17.14■□□□□ 0.33
Scn11aQ9R053 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Gm12957-201ENSMUST00000117835 377 ntBASIC17.14■□□□□ 0.33
Scn11aQ9R053 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn11aQ9R053 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms