Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gm9431-201ENSMUST00000119765 1051 ntBASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gm10268-201ENSMUST00000085340 555 ntBASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gm12715-201ENSMUST00000121430 1128 ntBASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Gm12882-201ENSMUST00000121696 517 ntBASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Scn4aQ9ER60 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Scn4aQ9ER60 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Scn4aQ9ER60 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC19.64■□□□□ 0.74
Scn4aQ9ER60 Gm5049-201ENSMUST00000195878 1590 ntBASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Gm43195-201ENSMUST00000200614 2332 ntBASIC19.64■□□□□ 0.73
Scn4aQ9ER60 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC19.64■□□□□ 0.73
Scn4aQ9ER60 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Mir1943-201ENSMUST00000158276 73 ntBASIC19.63■□□□□ 0.73
Scn4aQ9ER60 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC19.63■□□□□ 0.73
Scn4aQ9ER60 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Scn4aQ9ER60 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm24830-201ENSMUST00000102024 166 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm4909-201ENSMUST00000118749 794 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm25890-201ENSMUST00000177643 165 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Rnu1b2-201ENSMUST00000178073 165 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Rnu1b1-201ENSMUST00000178250 165 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm22614-201ENSMUST00000178300 165 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm29608-201ENSMUST00000190444 463 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm22042-201ENSMUST00000082989 165 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm26232-201ENSMUST00000083360 166 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm24136-201ENSMUST00000083374 165 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Rnu1b6-201ENSMUST00000083839 166 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm26110-201ENSMUST00000083971 165 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm9252-201ENSMUST00000172364 1602 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm13369-201ENSMUST00000119442 987 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Scn4aQ9ER60 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Gm6407-201ENSMUST00000176468 549 ntBASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC19.61■□□□□ 0.73
Scn4aQ9ER60 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms