Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.07■□□□□ 0
Vps28Q9D1C8 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Gm11543-201ENSMUST00000120758 370 ntBASIC15.06■□□□□ 0
Vps28Q9D1C8 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Mir6990-201ENSMUST00000183724 91 ntBASIC15.06■□□□□ 0
Vps28Q9D1C8 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Vps28Q9D1C8 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC15.06■□□□□ 0
Vps28Q9D1C8 Gm30437-201ENSMUST00000206086 1201 ntBASIC15.06■□□□□ 0
Vps28Q9D1C8 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.06■□□□□ 0
Vps28Q9D1C8 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Vps28Q9D1C8 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ 0
Vps28Q9D1C8 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC15.05■□□□□ 0
Vps28Q9D1C8 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Vps28Q9D1C8 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC15.05■□□□□ 0
Vps28Q9D1C8 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Vps28Q9D1C8 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
Vps28Q9D1C8 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Vps28Q9D1C8 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.05■□□□□ -0
Vps28Q9D1C8 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.05■□□□□ -0
Vps28Q9D1C8 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Gm15483-201ENSMUST00000120338 456 ntBASIC15.05■□□□□ -0
Vps28Q9D1C8 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.05■□□□□ -0
Vps28Q9D1C8 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Vps25-202ENSMUST00000042477 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Gm8396-201ENSMUST00000057361 823 ntBASIC15.05■□□□□ -0
Vps28Q9D1C8 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Gm6018-201ENSMUST00000216090 1306 ntBASIC15.05■□□□□ -0
Vps28Q9D1C8 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.05■□□□□ -0
Vps28Q9D1C8 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Vps28Q9D1C8 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Vps28Q9D1C8 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
Vps28Q9D1C8 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
Vps28Q9D1C8 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC15.04■□□□□ -0
Vps28Q9D1C8 Gm43125-201ENSMUST00000201724 730 ntBASIC15.04■□□□□ -0
Vps28Q9D1C8 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC15.04■□□□□ -0
Vps28Q9D1C8 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Vps28Q9D1C8 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.04■□□□□ -0
Vps28Q9D1C8 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Vps28Q9D1C8 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.04■□□□□ -0
Vps28Q9D1C8 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms