Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Gm10275-202ENSMUST00000168697 495 ntBASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Gm10275-201ENSMUST00000092620 635 ntBASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Usp40Q8BWR4 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 AC174678.1-201ENSMUST00000228007 2749 ntBASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Usp40Q8BWR4 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 AA619741-201ENSMUST00000195095 646 ntBASIC20.06■□□□□ 0.8
Usp40Q8BWR4 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 AC156016.3-201ENSMUST00000228623 344 ntBASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Gm20445-201ENSMUST00000061905 565 ntBASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Usp40Q8BWR4 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm22189-201ENSMUST00000103822 86 ntBASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm12859-201ENSMUST00000117834 427 ntBASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm9522-201ENSMUST00000182394 926 ntBASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm7390-201ENSMUST00000212452 1216 ntBASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 AC121804.3-201ENSMUST00000223420 295 ntBASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Hist1h2al-201ENSMUST00000091708 339 ntBASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm9252-201ENSMUST00000172364 1602 ntBASIC20.05■□□□□ 0.8
Usp40Q8BWR4 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Usp40Q8BWR4 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms