Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
ShhQ62226 Gm24158-201ENSMUST00000175263 71 ntBASIC13.72□□□□□ -0.21
ShhQ62226 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
ShhQ62226 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC13.72□□□□□ -0.21
ShhQ62226 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC13.72□□□□□ -0.21
ShhQ62226 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Gm8242-201ENSMUST00000193029 1420 ntBASIC13.72□□□□□ -0.21
ShhQ62226 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
ShhQ62226 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
ShhQ62226 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Gm5049-201ENSMUST00000195878 1590 ntBASIC13.71□□□□□ -0.21
ShhQ62226 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
ShhQ62226 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
ShhQ62226 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
ShhQ62226 Gm5184-201ENSMUST00000220417 1702 ntBASIC13.71□□□□□ -0.21
ShhQ62226 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
ShhQ62226 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.71□□□□□ -0.21
ShhQ62226 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC13.71□□□□□ -0.21
ShhQ62226 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC13.71□□□□□ -0.21
ShhQ62226 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
ShhQ62226 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
ShhQ62226 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
ShhQ62226 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC13.71□□□□□ -0.22
ShhQ62226 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.71□□□□□ -0.22
ShhQ62226 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 AC154767.3-201ENSMUST00000225150 1342 ntBASIC13.7□□□□□ -0.22
ShhQ62226 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC13.7□□□□□ -0.22
ShhQ62226 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
ShhQ62226 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.7□□□□□ -0.22
ShhQ62226 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC13.7□□□□□ -0.22
ShhQ62226 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC13.7□□□□□ -0.22
ShhQ62226 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
ShhQ62226 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
ShhQ62226 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
ShhQ62226 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
ShhQ62226 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
ShhQ62226 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Gm45293-201ENSMUST00000209754 1812 ntBASIC13.69□□□□□ -0.22
ShhQ62226 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC13.69□□□□□ -0.22
ShhQ62226 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
ShhQ62226 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 AC174678.1-201ENSMUST00000228007 2749 ntBASIC13.69□□□□□ -0.22
ShhQ62226 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
ShhQ62226 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
ShhQ62226 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC13.69□□□□□ -0.22
ShhQ62226 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC13.69□□□□□ -0.22
ShhQ62226 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC13.69□□□□□ -0.22
ShhQ62226 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC13.69□□□□□ -0.22
ShhQ62226 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms