Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Gm8116-201ENSMUST00000182917 1201 ntBASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Gm29541-201ENSMUST00000191351 678 ntBASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Gm37230-201ENSMUST00000194491 818 ntBASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Gm37171-201ENSMUST00000192636 1185 ntBASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Gm10253-201ENSMUST00000194270 940 ntBASIC17.63■□□□□ 0.41
Vps54Q5SPW0 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 AC158529.1-201ENSMUST00000223618 239 ntBASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Fgf17-202ENSMUST00000227123 1336 ntBASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Vps54Q5SPW0 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Vps54Q5SPW0 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Vps54Q5SPW0 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Vps54Q5SPW0 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms