Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Gm12585-201ENSMUST00000117307 290 ntBASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Gm18018-201ENSMUST00000198273 408 ntBASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Gm18062-201ENSMUST00000208020 547 ntBASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Gm18055-201ENSMUST00000208254 547 ntBASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 AC159006.1-201ENSMUST00000226396 258 ntBASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC23.65■■□□□ 1.38
Ccdc88bQ4QRL3 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Gm45384-201ENSMUST00000210451 277 ntBASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
Ccdc88bQ4QRL3 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ccdc88bQ4QRL3 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ccdc88bQ4QRL3 Gm10584-201ENSMUST00000207036 2628 ntBASIC23.64■■□□□ 1.37
Ccdc88bQ4QRL3 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ccdc88bQ4QRL3 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ccdc88bQ4QRL3 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Ccdc88bQ4QRL3 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Ccdc88bQ4QRL3 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Gm15393-201ENSMUST00000120499 219 ntBASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 AC139580.1-202ENSMUST00000223574 928 ntBASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Ccdc88bQ4QRL3 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Gm16000-201ENSMUST00000146657 447 ntTSL 2 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Ighv1-25-201ENSMUST00000195638 345 ntBASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Gm14452-201ENSMUST00000118680 1632 ntBASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Gm14451-201ENSMUST00000121581 1542 ntBASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Ccdc88bQ4QRL3 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Gm12091-201ENSMUST00000146791 830 ntBASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 AC153962.4-201ENSMUST00000217878 242 ntBASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Ccdc88bQ4QRL3 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC23.61■■□□□ 1.37
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms