Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm45612-201ENSMUST00000211320 160 ntBASIC17.29■□□□□ 0.36
Limch1Q3UH68 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.29■□□□□ 0.36
Limch1Q3UH68 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Limch1Q3UH68 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Mir6956-201ENSMUST00000183598 62 ntBASIC17.28■□□□□ 0.36
Limch1Q3UH68 AC139382.1-201ENSMUST00000221402 498 ntBASIC17.28■□□□□ 0.36
Limch1Q3UH68 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Gm10676-201ENSMUST00000098778 3221 ntBASIC17.28■□□□□ 0.36
Limch1Q3UH68 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Limch1Q3UH68 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Gm15593-201ENSMUST00000122085 1008 ntBASIC17.27■□□□□ 0.36
Limch1Q3UH68 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC17.27■□□□□ 0.36
Limch1Q3UH68 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Limch1Q3UH68 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Limch1Q3UH68 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Gm12008-201ENSMUST00000117791 755 ntBASIC17.26■□□□□ 0.35
Limch1Q3UH68 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC17.26■□□□□ 0.35
Limch1Q3UH68 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Limch1Q3UH68 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.25■□□□□ 0.35
Limch1Q3UH68 Gm13616-201ENSMUST00000120600 222 ntBASIC17.25■□□□□ 0.35
Limch1Q3UH68 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 65.7 ms