Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gm10275-202ENSMUST00000168697 495 ntBASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gm6283-201ENSMUST00000182369 1000 ntBASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gm2495-201ENSMUST00000191160 466 ntBASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Gm10275-201ENSMUST00000092620 635 ntBASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Ddb1Q3U1J4 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Gm4804-201ENSMUST00000182234 999 ntBASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Gm27731-201ENSMUST00000185192 107 ntBASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Ddb1Q3U1J4 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Gm42853-201ENSMUST00000201273 1387 ntBASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Pmepa1os-201ENSMUST00000150185 680 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Gm8463-201ENSMUST00000208573 613 ntBASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Gm11661-201ENSMUST00000121761 1327 ntBASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Ddb1Q3U1J4 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Zscan30-202ENSMUST00000224144 1458 ntBASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Ddb1Q3U1J4 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms