Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Lrrc56-203ENSMUST00000084446 2390 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.68□□□□□ -0.38
Nkx3-1P97436 Gm15487-201ENSMUST00000122373 465 ntBASIC12.68□□□□□ -0.38
Nkx3-1P97436 Gm9719-201ENSMUST00000162765 543 ntBASIC12.68□□□□□ -0.38
Nkx3-1P97436 H2-Pa-201ENSMUST00000182803 626 ntBASIC12.68□□□□□ -0.38
Nkx3-1P97436 Gm27680-201ENSMUST00000184192 160 ntBASIC12.68□□□□□ -0.38
Nkx3-1P97436 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Gm7775-201ENSMUST00000218871 853 ntBASIC12.68□□□□□ -0.38
Nkx3-1P97436 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.68□□□□□ -0.38
Nkx3-1P97436 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Nkx3-1P97436 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Gm24543-201ENSMUST00000103867 82 ntBASIC12.67□□□□□ -0.38
Nkx3-1P97436 Gm5566-201ENSMUST00000116118 459 ntBASIC12.67□□□□□ -0.38
Nkx3-1P97436 Gm14719-201ENSMUST00000121891 340 ntBASIC12.67□□□□□ -0.38
Nkx3-1P97436 Gm16215-201ENSMUST00000161990 637 ntBASIC12.67□□□□□ -0.38
Nkx3-1P97436 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Gtpbp10-211ENSMUST00000198799 648 ntBASIC12.67□□□□□ -0.38
Nkx3-1P97436 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Crem-203ENSMUST00000082141 2820 ntTSL 5 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Nkx3-1P97436 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Syt7-205ENSMUST00000224135 1557 ntBASIC12.66□□□□□ -0.38
Nkx3-1P97436 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Nkx3-1P97436 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms