Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Gm44981-201ENSMUST00000205549 1943 ntBASIC17.59■□□□□ 0.41
Rfx1P48377 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Rfx1P48377 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Gm11780-201ENSMUST00000136880 516 ntBASIC17.59■□□□□ 0.41
Rfx1P48377 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Rfx1P48377 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.59■□□□□ 0.41
Rfx1P48377 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.59■□□□□ 0.41
Rfx1P48377 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
Rfx1P48377 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
Rfx1P48377 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Rfx1P48377 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Rfx1P48377 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx1P48377 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx1P48377 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx1P48377 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx1P48377 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Rfx1P48377 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Rfx1P48377 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.58■□□□□ 0.41
Rfx1P48377 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
Rfx1P48377 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.58■□□□□ 0.4
Rfx1P48377 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Rfx1P48377 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Rfx1P48377 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.58■□□□□ 0.4
Rfx1P48377 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC17.58■□□□□ 0.4
Rfx1P48377 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 AC166574.6-201ENSMUST00000227889 1806 ntBASIC17.58■□□□□ 0.4
Rfx1P48377 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Rfx1P48377 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Rfx1P48377 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Rfx1P48377 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Gm38042-201ENSMUST00000191614 5208 ntBASIC17.57■□□□□ 0.4
Rfx1P48377 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC17.57■□□□□ 0.4
Rfx1P48377 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Gm4081-201ENSMUST00000195287 1838 ntBASIC17.57■□□□□ 0.4
Rfx1P48377 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.57■□□□□ 0.4
Rfx1P48377 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.57■□□□□ 0.4
Rfx1P48377 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.57■□□□□ 0.4
Rfx1P48377 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC17.57■□□□□ 0.4
Rfx1P48377 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Rfx1P48377 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Rfx1P48377 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Rfx1P48377 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Rfx1P48377 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Rfx1P48377 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC17.56■□□□□ 0.4
Rfx1P48377 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC17.56■□□□□ 0.4
Rfx1P48377 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms