Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC15.37■□□□□ 0.05
HttP42859 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Gm17376-201ENSMUST00000166016 84 ntBASIC15.37■□□□□ 0.05
HttP42859 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC15.37■□□□□ 0.05
HttP42859 Gm27682-201ENSMUST00000183930 110 ntBASIC15.37■□□□□ 0.05
HttP42859 Gm18905-201ENSMUST00000205454 928 ntBASIC15.37■□□□□ 0.05
HttP42859 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
HttP42859 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.36■□□□□ 0.05
HttP42859 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC15.36■□□□□ 0.05
HttP42859 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
HttP42859 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.36■□□□□ 0.05
HttP42859 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC15.36■□□□□ 0.05
HttP42859 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Gm6283-201ENSMUST00000182369 1000 ntBASIC15.36■□□□□ 0.05
HttP42859 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC15.36■□□□□ 0.05
HttP42859 Gm8706-201ENSMUST00000197372 1491 ntBASIC15.36■□□□□ 0.05
HttP42859 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC15.36■□□□□ 0.05
HttP42859 Ces2f-201ENSMUST00000076384 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HttP42859 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Ighv1-25-201ENSMUST00000195638 345 ntBASIC15.35■□□□□ 0.05
HttP42859 AU022133-201ENSMUST00000200601 873 ntBASIC15.35■□□□□ 0.05
HttP42859 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
HttP42859 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC15.35■□□□□ 0.05
HttP42859 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HttP42859 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HttP42859 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC15.34■□□□□ 0.05
HttP42859 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
HttP42859 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Gm37008-201ENSMUST00000195712 319 ntBASIC15.34■□□□□ 0.05
HttP42859 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC15.34■□□□□ 0.05
HttP42859 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
HttP42859 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Mir6979-201ENSMUST00000183927 56 ntBASIC15.34■□□□□ 0.05
HttP42859 Gm43094-201ENSMUST00000196549 921 ntBASIC15.34■□□□□ 0.05
HttP42859 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
HttP42859 Gm18473-201ENSMUST00000220543 868 ntBASIC15.34■□□□□ 0.05
HttP42859 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HttP42859 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HttP42859 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HttP42859 Gm8749-201ENSMUST00000117737 331 ntBASIC15.33■□□□□ 0.05
HttP42859 Gm13297-201ENSMUST00000120205 934 ntBASIC15.33■□□□□ 0.05
HttP42859 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC15.33■□□□□ 0.05
HttP42859 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HttP42859 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HttP42859 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HttP42859 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HttP42859 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HttP42859 Gm2383-201ENSMUST00000181461 807 ntBASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms