Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC14.39□□□□□ -0.11
Cbx4O55187 AC131586.3-201ENSMUST00000228355 1367 ntBASIC14.39□□□□□ -0.11
Cbx4O55187 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC14.39□□□□□ -0.11
Cbx4O55187 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.39□□□□□ -0.11
Cbx4O55187 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Cbx4O55187 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC14.39□□□□□ -0.11
Cbx4O55187 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Cbx4O55187 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Cbx4O55187 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.38□□□□□ -0.11
Cbx4O55187 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Gm43509-201ENSMUST00000196551 2594 ntBASIC14.38□□□□□ -0.11
Cbx4O55187 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Cbx4O55187 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC14.38□□□□□ -0.11
Cbx4O55187 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Cbx4O55187 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Cbx4O55187 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC14.38□□□□□ -0.11
Cbx4O55187 Gm12134-201ENSMUST00000122109 520 ntBASIC14.38□□□□□ -0.11
Cbx4O55187 Gm12260-201ENSMUST00000122447 411 ntBASIC14.38□□□□□ -0.11
Cbx4O55187 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Gm27301-201ENSMUST00000184012 127 ntBASIC14.38□□□□□ -0.11
Cbx4O55187 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 AC159295.1-201ENSMUST00000225326 940 ntBASIC14.38□□□□□ -0.11
Cbx4O55187 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC14.38□□□□□ -0.11
Cbx4O55187 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Cbx4O55187 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
Cbx4O55187 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Cbx4O55187 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Cbx4O55187 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
Cbx4O55187 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.37□□□□□ -0.11
Cbx4O55187 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Gm8749-201ENSMUST00000117737 331 ntBASIC14.37□□□□□ -0.11
Cbx4O55187 Gm13464-201ENSMUST00000119418 935 ntBASIC14.37□□□□□ -0.11
Cbx4O55187 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Cbx4O55187 Gm11594-201ENSMUST00000122313 162 ntBASIC14.37□□□□□ -0.11
Cbx4O55187 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Cbx4O55187 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.37□□□□□ -0.11
Cbx4O55187 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Cbx4O55187 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Cbx4O55187 Gm8000-201ENSMUST00000188378 592 ntBASIC14.37□□□□□ -0.11
Cbx4O55187 Gm17968-201ENSMUST00000194902 784 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms