Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Hmgb3O54879 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC12.18□□□□□ -0.46
Hmgb3O54879 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC12.18□□□□□ -0.46
Hmgb3O54879 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC12.18□□□□□ -0.46
Hmgb3O54879 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Hmgb3O54879 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Hmgb3O54879 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm4609-201ENSMUST00000106443 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm5138-201ENSMUST00000113842 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm15191-201ENSMUST00000117933 1000 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm12182-201ENSMUST00000118655 1008 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm13882-201ENSMUST00000120886 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm10284-201ENSMUST00000145057 1005 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm10481-201ENSMUST00000179228 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm2574-201ENSMUST00000181051 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm3200-201ENSMUST00000181493 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm8825-201ENSMUST00000182565 998 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm4518-201ENSMUST00000182638 718 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm8330-201ENSMUST00000182754 1008 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm4575-201ENSMUST00000182991 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm8709-201ENSMUST00000183230 1012 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Krtap5-1-202ENSMUST00000188274 742 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm10293-201ENSMUST00000076317 1002 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm6316-201ENSMUST00000082064 1020 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm43195-201ENSMUST00000200614 2332 ntBASIC12.17□□□□□ -0.46
Hmgb3O54879 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.17□□□□□ -0.46
Hmgb3O54879 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Hmgb3O54879 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Tanc1-201ENSMUST00000037526 7873 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
Hmgb3O54879 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Hmgb3O54879 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Caprin2-202ENSMUST00000111569 3697 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Hmgb3O54879 Gm22697-201ENSMUST00000175194 63 ntBASIC12.16□□□□□ -0.46
Hmgb3O54879 Gm22240-201ENSMUST00000175225 82 ntBASIC12.16□□□□□ -0.46
Hmgb3O54879 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms