Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Clk4O35493 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Clk4O35493 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
Clk4O35493 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Clk4O35493 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Clk4O35493 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Gm13597-201ENSMUST00000121239 375 ntBASIC14.15□□□□□ -0.14
Clk4O35493 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC14.15□□□□□ -0.14
Clk4O35493 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC14.15□□□□□ -0.14
Clk4O35493 Gm5177-201ENSMUST00000183092 997 ntBASIC14.15□□□□□ -0.14
Clk4O35493 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC14.15□□□□□ -0.14
Clk4O35493 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.15□□□□□ -0.14
Clk4O35493 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Clk4O35493 Gm7229-201ENSMUST00000214719 1007 ntBASIC14.15□□□□□ -0.14
Clk4O35493 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Thap2-203ENSMUST00000218989 527 ntBASIC14.15□□□□□ -0.14
Clk4O35493 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Clk4O35493 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Clk4O35493 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC14.15□□□□□ -0.14
Clk4O35493 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.15□□□□□ -0.14
Clk4O35493 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Clk4O35493 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Clk4O35493 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Clk4O35493 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC14.14□□□□□ -0.15
Clk4O35493 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC14.14□□□□□ -0.15
Clk4O35493 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
Clk4O35493 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Clk4O35493 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC14.13□□□□□ -0.15
Clk4O35493 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Clk4O35493 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Clk4O35493 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Clk4O35493 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.13□□□□□ -0.15
Clk4O35493 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Gm43332-201ENSMUST00000202511 1044 ntBASIC14.13□□□□□ -0.15
Clk4O35493 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.13□□□□□ -0.15
Clk4O35493 Ndufaf2-202ENSMUST00000223734 556 ntBASIC14.13□□□□□ -0.15
Clk4O35493 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Clk4O35493 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Mxra8os-201ENSMUST00000097740 687 ntBASIC14.13□□□□□ -0.15
Clk4O35493 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC14.13□□□□□ -0.15
Clk4O35493 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Gm13034-201ENSMUST00000121342 3177 ntBASIC14.13□□□□□ -0.15
Clk4O35493 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Clk4O35493 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Mbnl2-204ENSMUST00000227012 2390 ntBASIC14.12□□□□□ -0.15
Clk4O35493 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
Clk4O35493 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Clk4O35493 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Clk4O35493 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms