Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 C2cd2l-201ENSMUST00000065080 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
Clip3B9EHT4 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.26□□□□□ -0.13
Clip3B9EHT4 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.26□□□□□ -0.13
Clip3B9EHT4 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC14.26□□□□□ -0.13
Clip3B9EHT4 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC14.26□□□□□ -0.13
Clip3B9EHT4 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC14.26□□□□□ -0.13
Clip3B9EHT4 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC14.26□□□□□ -0.13
Clip3B9EHT4 Gm10154-201ENSMUST00000084445 354 ntBASIC14.26□□□□□ -0.13
Clip3B9EHT4 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Clip3B9EHT4 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Gm15427-201ENSMUST00000117288 531 ntBASIC14.25□□□□□ -0.13
Clip3B9EHT4 Gm9385-201ENSMUST00000117563 472 ntBASIC14.25□□□□□ -0.13
Clip3B9EHT4 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC14.25□□□□□ -0.13
Clip3B9EHT4 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Clip3B9EHT4 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.25□□□□□ -0.13
Clip3B9EHT4 AC155252.2-201ENSMUST00000226946 680 ntBASIC14.25□□□□□ -0.13
Clip3B9EHT4 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Clip3B9EHT4 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Clip3B9EHT4 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Gm16198-201ENSMUST00000118766 670 ntBASIC14.24□□□□□ -0.13
Clip3B9EHT4 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Clip3B9EHT4 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms