Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Fbxl12-205ENSMUST00000140702 1555 ntBASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Prpf40aQ9R1C7 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Gm27525-201ENSMUST00000184465 107 ntBASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Gm8000-201ENSMUST00000188378 592 ntBASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 AC159295.1-201ENSMUST00000225326 940 ntBASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Gm43195-201ENSMUST00000200614 2332 ntBASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Prpf40aQ9R1C7 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Gm11779-201ENSMUST00000118541 368 ntBASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Gm12134-201ENSMUST00000122109 520 ntBASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 AC154572.2-201ENSMUST00000225105 997 ntBASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Prpf40aQ9R1C7 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Prpf40aQ9R1C7 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms