Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Lypd1-202ENSMUST00000159417 6464 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Gm38318-201ENSMUST00000195769 1706 ntBASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Gtf2b-201ENSMUST00000029938 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Nrn1-204ENSMUST00000224323 1779 ntBASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Gm5177-201ENSMUST00000183092 997 ntBASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Gm45747-201ENSMUST00000212203 999 ntBASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Celf4-206ENSMUST00000224553 1729 ntBASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Vps53Q8CCB4 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Vps53Q8CCB4 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Gm13365-201ENSMUST00000121188 973 ntBASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Gm44335-201ENSMUST00000196879 141 ntBASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Gm44297-201ENSMUST00000198304 141 ntBASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Gm44346-201ENSMUST00000198851 141 ntBASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.11■□□□□ 0.33
Vps53Q8CCB4 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms