Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Ralgapa1-201ENSMUST00000085385 7901 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim47Q8C0E3 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Carlr-201ENSMUST00000181515 2574 ntBASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Gm9726-201ENSMUST00000180321 678 ntBASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Gm6944-201ENSMUST00000182449 1006 ntBASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Gm19891-201ENSMUST00000189771 303 ntBASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 AC158529.1-201ENSMUST00000223618 239 ntBASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim47Q8C0E3 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Gm29541-201ENSMUST00000191351 678 ntBASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Gm10253-201ENSMUST00000194270 940 ntBASIC16.3■□□□□ 0.2
Trim47Q8C0E3 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Gm6756-201ENSMUST00000180647 1620 ntBASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim47Q8C0E3 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Gm8116-201ENSMUST00000182917 1201 ntBASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Mir6956-201ENSMUST00000183598 62 ntBASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Gm45098-201ENSMUST00000207179 657 ntBASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim47Q8C0E3 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim47Q8C0E3 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 66.1 ms