Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 AC093043.3-201ENSMUST00000226531 2273 ntBASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.12■□□□□ 0.65
Scaf1Q5U4C3 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Gm5354-201ENSMUST00000182417 973 ntBASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 AC165157.4-201ENSMUST00000220587 139 ntBASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scaf1Q5U4C3 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Gm9115-201ENSMUST00000120192 1348 ntBASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Gm37917-201ENSMUST00000194711 392 ntBASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Scaf1Q5U4C3 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gm15163-201ENSMUST00000120749 1302 ntBASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gm11434-201ENSMUST00000122379 629 ntBASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gm6283-201ENSMUST00000182369 1000 ntBASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gm18624-201ENSMUST00000220966 658 ntBASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Scaf1Q5U4C3 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Gm45667-201ENSMUST00000210380 1316 ntBASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Scaf1Q5U4C3 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Scaf1Q5U4C3 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Scaf1Q5U4C3 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC19.08■□□□□ 0.64
Scaf1Q5U4C3 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Scaf1Q5U4C3 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Scaf1Q5U4C3 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Scaf1Q5U4C3 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC19.08■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 81.8 ms