Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm18737-201ENSMUST00000173594 937 ntBASIC17.68■□□□□ 0.42
Vps54Q5SPW0 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Gm5779-201ENSMUST00000218467 910 ntBASIC17.68■□□□□ 0.42
Vps54Q5SPW0 AC139382.1-201ENSMUST00000221402 498 ntBASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Vps54Q5SPW0 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Gm13616-201ENSMUST00000120600 222 ntBASIC17.67■□□□□ 0.42
Vps54Q5SPW0 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Gm45098-201ENSMUST00000207179 657 ntBASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Gm6756-201ENSMUST00000180647 1620 ntBASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Vps54Q5SPW0 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.66■□□□□ 0.42
Vps54Q5SPW0 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Gm7774-201ENSMUST00000200064 533 ntBASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Vps54Q5SPW0 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Gm24158-201ENSMUST00000175263 71 ntBASIC17.65■□□□□ 0.42
Vps54Q5SPW0 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Vps54Q5SPW0 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
Vps54Q5SPW0 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Vps54Q5SPW0 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC17.64■□□□□ 0.42
Vps54Q5SPW0 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Vps54Q5SPW0 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Vps54Q5SPW0 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 41.3 ms