Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC17.32■□□□□ 0.36
Limch1Q3UH68 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Limch1Q3UH68 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Limch1Q3UH68 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Gm45747-201ENSMUST00000212203 999 ntBASIC17.31■□□□□ 0.36
Limch1Q3UH68 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Limch1Q3UH68 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Gm12620-201ENSMUST00000119791 1986 ntBASIC17.3■□□□□ 0.36
Limch1Q3UH68 Gm12612-201ENSMUST00000140182 1986 ntBASIC17.3■□□□□ 0.36
Limch1Q3UH68 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Gm14057-201ENSMUST00000120631 482 ntBASIC17.3■□□□□ 0.36
Limch1Q3UH68 Gm5177-201ENSMUST00000183092 997 ntBASIC17.3■□□□□ 0.36
Limch1Q3UH68 Gm27301-201ENSMUST00000184012 127 ntBASIC17.3■□□□□ 0.36
Limch1Q3UH68 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC17.3■□□□□ 0.36
Limch1Q3UH68 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC17.3■□□□□ 0.36
Limch1Q3UH68 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.3■□□□□ 0.36
Limch1Q3UH68 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
Limch1Q3UH68 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Gm15427-201ENSMUST00000117288 531 ntBASIC17.29■□□□□ 0.36
Limch1Q3UH68 Gm12892-201ENSMUST00000117367 1146 ntBASIC17.29■□□□□ 0.36
Limch1Q3UH68 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC17.29■□□□□ 0.36
Limch1Q3UH68 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC17.29■□□□□ 0.36
Limch1Q3UH68 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Limch1Q3UH68 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC17.29■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms