Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 AC154680.1-201ENSMUST00000224376 859 ntBASIC17.06■□□□□ 0.32
Rnf180Q3U827 AC154462.2-201ENSMUST00000227519 370 ntBASIC17.06■□□□□ 0.32
Rnf180Q3U827 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Celf4-206ENSMUST00000224553 1729 ntBASIC17.06■□□□□ 0.32
Rnf180Q3U827 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Gm37812-201ENSMUST00000195216 2475 ntBASIC17.06■□□□□ 0.32
Rnf180Q3U827 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
Rnf180Q3U827 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Gm21038-201ENSMUST00000222205 1383 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Gm8749-201ENSMUST00000117737 331 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Gm5069-202ENSMUST00000192714 1011 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Gm38223-201ENSMUST00000194484 695 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Gm18916-201ENSMUST00000198264 1246 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 AC166997.1-201ENSMUST00000225122 572 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.05■□□□□ 0.32
Rnf180Q3U827 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Rnf180Q3U827 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.05■□□□□ 0.32
Rnf180Q3U827 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm2606-201ENSMUST00000100754 1002 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm15370-201ENSMUST00000117158 253 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm12537-201ENSMUST00000119266 1002 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm12070-201ENSMUST00000119551 1002 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm12671-201ENSMUST00000119978 1002 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm13292-201ENSMUST00000120014 1000 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm10359-201ENSMUST00000180167 1002 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm12033-201ENSMUST00000180654 1002 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm5559-201ENSMUST00000180755 1002 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Olfr286-202ENSMUST00000205305 969 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Gm7293-201ENSMUST00000216682 1007 ntBASIC17.04■□□□□ 0.32
Rnf180Q3U827 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC17.04■□□□□ 0.32
Rnf180Q3U827 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Rnf180Q3U827 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Gm5620-201ENSMUST00000077991 1348 ntBASIC17.03■□□□□ 0.32
Rnf180Q3U827 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Rnf180Q3U827 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Gm44608-201ENSMUST00000206827 855 ntBASIC17.03■□□□□ 0.32
Rnf180Q3U827 Gm10109-202ENSMUST00000206890 1211 ntBASIC17.03■□□□□ 0.32
Rnf180Q3U827 C230062I16Rik-204ENSMUST00000208342 643 ntTSL 3 BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Rnf180Q3U827 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms