Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 App-207ENSMUST00000227737 2827 ntBASIC18.55■□□□□ 0.56
Ddb1Q3U1J4 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Gm15198-201ENSMUST00000117283 177 ntBASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Ddb1Q3U1J4 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Cpxm1-201ENSMUST00000028897 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Gm14660-201ENSMUST00000119809 575 ntBASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Gm9728-201ENSMUST00000200197 1055 ntBASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 AC155258.1-201ENSMUST00000219303 253 ntBASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 AC154171.1-201ENSMUST00000224610 643 ntBASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Ddb1Q3U1J4 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Gm42690-201ENSMUST00000197921 1836 ntBASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Mup-ps23-201ENSMUST00000118063 630 ntBASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Gm21470-201ENSMUST00000187680 696 ntBASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Gm9257-201ENSMUST00000221254 232 ntBASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Gm8399-201ENSMUST00000082300 1117 ntBASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Olfr582-201ENSMUST00000098212 960 ntBASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Ddb1Q3U1J4 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ddb1Q3U1J4 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ddb1Q3U1J4 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
Ddb1Q3U1J4 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Gm44974-201ENSMUST00000206387 1279 ntBASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Ddb1Q3U1J4 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms