Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Gm27533-201ENSMUST00000183800 152 ntBASIC12.71□□□□□ -0.37
Nkx3-1P97436 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Nkx3-1P97436 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Nkx3-1P97436 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Nkx3-1P97436 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Nkx3-1P97436 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Nkx3-1P97436 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Nkx3-1P97436 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC12.71□□□□□ -0.38
Nkx3-1P97436 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Nkx3-1P97436 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Gm6756-201ENSMUST00000180647 1620 ntBASIC12.7□□□□□ -0.38
Nkx3-1P97436 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Mdm1-208ENSMUST00000219087 1318 ntTSL 2 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Gm13823-201ENSMUST00000119930 345 ntBASIC12.7□□□□□ -0.38
Nkx3-1P97436 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Gm44344-201ENSMUST00000200287 129 ntBASIC12.7□□□□□ -0.38
Nkx3-1P97436 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Nkx3-1P97436 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.69□□□□□ -0.38
Nkx3-1P97436 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gm5479-201ENSMUST00000160578 435 ntBASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gm7730-201ENSMUST00000212486 454 ntBASIC12.69□□□□□ -0.38
Nkx3-1P97436 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Rps6kl1-201ENSMUST00000019379 2304 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Nkx3-1P97436 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms