Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 AC130829.1-201ENSMUST00000221548 494 ntBASIC17.41■□□□□ 0.38
Col3a1P08121 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.41■□□□□ 0.38
Col3a1P08121 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col3a1P08121 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Col3a1P08121 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Ldb3-207ENSMUST00000227819 1499 ntBASIC17.4■□□□□ 0.38
Col3a1P08121 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Col3a1P08121 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC17.4■□□□□ 0.38
Col3a1P08121 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC17.4■□□□□ 0.38
Col3a1P08121 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC17.4■□□□□ 0.38
Col3a1P08121 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col3a1P08121 AC102291.3-201ENSMUST00000226566 405 ntBASIC17.4■□□□□ 0.38
Col3a1P08121 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
Col3a1P08121 AC154806.6-201ENSMUST00000228192 202 ntBASIC17.4■□□□□ 0.38
Col3a1P08121 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col3a1P08121 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col3a1P08121 Gnb4-201ENSMUST00000108234 2510 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Kctd8-201ENSMUST00000054095 2859 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC17.4■□□□□ 0.38
Col3a1P08121 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col3a1P08121 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Col3a1P08121 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC17.39■□□□□ 0.38
Col3a1P08121 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC17.39■□□□□ 0.38
Col3a1P08121 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col3a1P08121 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Col3a1P08121 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
Col3a1P08121 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Col3a1P08121 Gm12585-201ENSMUST00000117307 290 ntBASIC17.39■□□□□ 0.37
Col3a1P08121 Gm15460-201ENSMUST00000118147 391 ntBASIC17.39■□□□□ 0.37
Col3a1P08121 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC17.39■□□□□ 0.37
Col3a1P08121 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC17.39■□□□□ 0.37
Col3a1P08121 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Col3a1P08121 Gm9794-201ENSMUST00000202370 423 ntBASIC17.39■□□□□ 0.37
Col3a1P08121 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Col3a1P08121 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.39■□□□□ 0.37
Col3a1P08121 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Gm14451-201ENSMUST00000121581 1542 ntBASIC17.39■□□□□ 0.37
Col3a1P08121 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.39■□□□□ 0.37
Col3a1P08121 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC17.39■□□□□ 0.37
Col3a1P08121 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.39■□□□□ 0.37
Col3a1P08121 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col3a1P08121 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
Col3a1P08121 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC17.38■□□□□ 0.37
Col3a1P08121 Gm40193-201ENSMUST00000209971 237 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Col3a1P08121 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC17.38■□□□□ 0.37
Col3a1P08121 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC17.38■□□□□ 0.37
Col3a1P08121 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col3a1P08121 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Gm12490-201ENSMUST00000120255 560 ntBASIC17.37■□□□□ 0.37
Col3a1P08121 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col3a1P08121 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms