Protein–RNA interactions for Protein: O88543

Cops3, COP9 signalosome complex subunit 3, mousemouse

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops3O88543 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC13.22□□□□□ -0.29
Cops3O88543 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Cops3O88543 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
Cops3O88543 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Ntrk2-209ENSMUST00000225950 2640 ntBASIC13.21□□□□□ -0.29
Cops3O88543 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Gm13418-201ENSMUST00000119097 944 ntBASIC13.21□□□□□ -0.29
Cops3O88543 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC13.21□□□□□ -0.29
Cops3O88543 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC13.21□□□□□ -0.29
Cops3O88543 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
Cops3O88543 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Cops3O88543 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 AC159301.1-201ENSMUST00000225130 1182 ntBASIC13.21□□□□□ -0.29
Cops3O88543 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Cops3O88543 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
Cops3O88543 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Cops3O88543 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cops3O88543 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cops3O88543 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cops3O88543 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cops3O88543 Gm38391-201ENSMUST00000191720 4069 ntBASIC13.21□□□□□ -0.3
Cops3O88543 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cops3O88543 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Cops3O88543 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Cops3O88543 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cops3O88543 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Cops3O88543 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
Cops3O88543 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
Cops3O88543 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cops3O88543 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.2□□□□□ -0.3
Cops3O88543 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cops3O88543 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Cops3O88543 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC13.2□□□□□ -0.3
Cops3O88543 Gm18669-201ENSMUST00000216049 778 ntBASIC13.2□□□□□ -0.3
Cops3O88543 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Cops3O88543 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
Cops3O88543 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Cops3O88543 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cops3O88543 AC121805.2-201ENSMUST00000218808 2538 ntBASIC13.19□□□□□ -0.3
Cops3O88543 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cops3O88543 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cops3O88543 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cops3O88543 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC13.19□□□□□ -0.3
Cops3O88543 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cops3O88543 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms