Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Gm12134-201ENSMUST00000122109 520 ntBASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Gm5069-202ENSMUST00000192714 1011 ntBASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Scn4aQ9ER60 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Gm21769-201ENSMUST00000211922 111 ntBASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Tyms-ps-201ENSMUST00000219550 915 ntBASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC19.73■□□□□ 0.75
Scn4aQ9ER60 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Syce1-201ENSMUST00000026553 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Gm10608-202ENSMUST00000213924 676 ntBASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Ntrk2-205ENSMUST00000224402 2284 ntBASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Gm15957-201ENSMUST00000118893 974 ntBASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Scn4aQ9ER60 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 AC153366.2-201ENSMUST00000219461 1984 ntBASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Gm12566-201ENSMUST00000121479 359 ntBASIC19.71■□□□□ 0.75
Scn4aQ9ER60 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC19.71■□□□□ 0.75
Scn4aQ9ER60 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Scn4aQ9ER60 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Gm14730-201ENSMUST00000122378 1045 ntBASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Gm7498-201ENSMUST00000203282 1084 ntBASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Scn4aQ9ER60 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms