Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Hist1h2al-201ENSMUST00000091708 339 ntBASIC20.19■□□□□ 0.82
Cpsf1Q9EPU4 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Ssr1-204ENSMUST00000225319 1610 ntBASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Gm4875-201ENSMUST00000118257 786 ntBASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Ppp1r37-201ENSMUST00000058444 3816 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Cpsf1Q9EPU4 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Gm6263-201ENSMUST00000120029 1342 ntBASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Gm9229-201ENSMUST00000222777 126 ntBASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Cpsf1Q9EPU4 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Gm29667-201ENSMUST00000190817 490 ntBASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Gm43598-201ENSMUST00000202482 2479 ntBASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Gm3365-201ENSMUST00000216296 1480 ntBASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
Cpsf1Q9EPU4 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cpsf1Q9EPU4 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cpsf1Q9EPU4 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Cpsf1Q9EPU4 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms