Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC13.71□□□□□ -0.21
Cdc40Q9DC48 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdc40Q9DC48 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdc40Q9DC48 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Cdc40Q9DC48 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Cdc40Q9DC48 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Cdc40Q9DC48 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cdc40Q9DC48 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cdc40Q9DC48 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
Cdc40Q9DC48 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdc40Q9DC48 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Cdc40Q9DC48 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Gm45747-201ENSMUST00000212203 999 ntBASIC13.7□□□□□ -0.22
Cdc40Q9DC48 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.7□□□□□ -0.22
Cdc40Q9DC48 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Gm43598-201ENSMUST00000202482 2479 ntBASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Gm13034-201ENSMUST00000121342 3177 ntBASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdc40Q9DC48 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Thap2-203ENSMUST00000218989 527 ntBASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdc40Q9DC48 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Gm15427-201ENSMUST00000117288 531 ntBASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Gm12892-201ENSMUST00000117367 1146 ntBASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdc40Q9DC48 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms