Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Ldha-ps-201ENSMUST00000119390 995 ntBASIC15.49■□□□□ 0.07
Clp1Q99LI9 Gm15806-201ENSMUST00000120696 955 ntBASIC15.49■□□□□ 0.07
Clp1Q99LI9 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Mir6392-201ENSMUST00000184924 108 ntBASIC15.49■□□□□ 0.07
Clp1Q99LI9 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.49■□□□□ 0.07
Clp1Q99LI9 AC165157.4-201ENSMUST00000220587 139 ntBASIC15.49■□□□□ 0.07
Clp1Q99LI9 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clp1Q99LI9 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Gm5763-201ENSMUST00000155951 1530 ntBASIC15.48■□□□□ 0.07
Clp1Q99LI9 BC001981-202ENSMUST00000191393 1545 ntBASIC15.48■□□□□ 0.07
Clp1Q99LI9 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 App-207ENSMUST00000227737 2827 ntBASIC15.48■□□□□ 0.07
Clp1Q99LI9 Gm12585-201ENSMUST00000117307 290 ntBASIC15.48■□□□□ 0.07
Clp1Q99LI9 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Gm17150-201ENSMUST00000165577 381 ntBASIC15.48■□□□□ 0.07
Clp1Q99LI9 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Clp1Q99LI9 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Gm42846-201ENSMUST00000201771 514 ntTSL 3 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Gm6266-201ENSMUST00000203844 806 ntBASIC15.47■□□□□ 0.07
Clp1Q99LI9 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Clp1Q99LI9 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
Clp1Q99LI9 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Gm6916-202ENSMUST00000205523 195 ntBASIC15.46■□□□□ 0.07
Clp1Q99LI9 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Clp1Q99LI9 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms