Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Gm13332-201ENSMUST00000120451 1398 ntBASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Gm12892-201ENSMUST00000117367 1146 ntBASIC16.52■□□□□ 0.24
Ushbp1Q8R370 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Ushbp1Q8R370 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Gm45504-201ENSMUST00000211407 2107 ntBASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Ushbp1Q8R370 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Carlr-201ENSMUST00000181515 2574 ntBASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Gm12134-201ENSMUST00000122109 520 ntBASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
Ushbp1Q8R370 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Gm15427-201ENSMUST00000117288 531 ntBASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Gm15593-201ENSMUST00000122085 1008 ntBASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Gm5177-201ENSMUST00000183092 997 ntBASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Nrn1-204ENSMUST00000224323 1779 ntBASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Ushbp1Q8R370 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Gm27301-201ENSMUST00000184012 127 ntBASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Ushbp1Q8R370 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms