Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Brf1Q8CFK2 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Gm43509-201ENSMUST00000196551 2594 ntBASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Gm11025-201ENSMUST00000140773 466 ntBASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Gm15500-202ENSMUST00000071641 1019 ntBASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Igdcc4-202ENSMUST00000077696 6361 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Brf1Q8CFK2 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Gm9726-201ENSMUST00000180321 678 ntBASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Gm4691-201ENSMUST00000182339 1000 ntBASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Gm2451-201ENSMUST00000199447 999 ntBASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Gm10290-201ENSMUST00000200451 999 ntBASIC17.79■□□□□ 0.44
Brf1Q8CFK2 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.79■□□□□ 0.44
Brf1Q8CFK2 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Brf1Q8CFK2 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 AC132104.2-201ENSMUST00000215011 266 ntBASIC17.78■□□□□ 0.44
Brf1Q8CFK2 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 AC131187.1-201ENSMUST00000224567 809 ntBASIC17.78■□□□□ 0.44
Brf1Q8CFK2 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Gpr146-202ENSMUST00000053120 1040 ntBASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Gm11960-202ENSMUST00000181063 2858 ntBASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Brf1Q8CFK2 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Brf1Q8CFK2 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms