Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Gm13597-201ENSMUST00000121239 375 ntBASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Nup88Q8CEC0 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Gm17271-201ENSMUST00000165535 355 ntBASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Gm44492-201ENSMUST00000197012 141 ntBASIC17.41■□□□□ 0.38
Nup88Q8CEC0 AC151836.1-202ENSMUST00000226259 753 ntBASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Nup88Q8CEC0 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Gm15920-201ENSMUST00000118998 402 ntBASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 AC122024.2-201ENSMUST00000220086 871 ntBASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Sorbs3-204ENSMUST00000227929 2460 ntBASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Nup88Q8CEC0 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Nup88Q8CEC0 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
Nup88Q8CEC0 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Nup88Q8CEC0 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Gm11025-201ENSMUST00000140773 466 ntBASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Nup88Q8CEC0 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC17.39■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms