Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Vps53Q8CCB4 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.17■□□□□ 0.34
Vps53Q8CCB4 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Vps53Q8CCB4 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 AC155252.2-201ENSMUST00000226946 680 ntBASIC17.16■□□□□ 0.34
Vps53Q8CCB4 CT009510.1-201ENSMUST00000227972 270 ntBASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Vps53Q8CCB4 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Gm15427-201ENSMUST00000117288 531 ntBASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC17.15■□□□□ 0.34
Vps53Q8CCB4 AA543401-201ENSMUST00000164248 1269 ntBASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Gm5312-201ENSMUST00000203728 547 ntBASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Vps53Q8CCB4 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Vps53Q8CCB4 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Gm45612-201ENSMUST00000211320 160 ntBASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Vps53Q8CCB4 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms