Protein–RNA interactions for Protein: Q8C4J0

Ccdc60, Coiled-coil domain-containing protein 60, mousemouse

Predictions only

Length 545 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc60Q8C4J0 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc60Q8C4J0 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc60Q8C4J0 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Gm27702-201ENSMUST00000184512 56 ntBASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Gm27494-201ENSMUST00000184735 189 ntBASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Gm43073-201ENSMUST00000198200 1189 ntBASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Klk2-ps-201ENSMUST00000205342 571 ntBASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ccdc60Q8C4J0 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Gm4691-201ENSMUST00000182339 1000 ntBASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Gm2451-201ENSMUST00000199447 999 ntBASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Gm10290-201ENSMUST00000200451 999 ntBASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Gm5628-201ENSMUST00000222318 1049 ntBASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Gm13332-201ENSMUST00000120451 1398 ntBASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc60Q8C4J0 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc60Q8C4J0 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Gm13365-201ENSMUST00000121188 973 ntBASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Gm9726-201ENSMUST00000180321 678 ntBASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ccdc60Q8C4J0 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc60Q8C4J0 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc60Q8C4J0 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc60Q8C4J0 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc60Q8C4J0 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc60Q8C4J0 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc60Q8C4J0 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc60Q8C4J0 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 68.3 ms