Protein–RNA interactions for Protein: Q8C2S0

Usp44, Ubiquitin carboxyl-terminal hydrolase 44, mousemouse

Predictions only

Length 711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp44Q8C2S0 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Gm2810-201ENSMUST00000118681 990 ntBASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Gm11543-201ENSMUST00000120758 370 ntBASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Mir1895-201ENSMUST00000122615 79 ntBASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Usp44Q8C2S0 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Rprl2-201ENSMUST00000157150 290 ntBASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Gm24513-201ENSMUST00000174964 138 ntBASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Gm27397-201ENSMUST00000184997 107 ntBASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Usp44Q8C2S0 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Gm42934-201ENSMUST00000196920 1345 ntBASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Gm18889-201ENSMUST00000174284 929 ntBASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Gm9182-201ENSMUST00000217829 639 ntBASIC17.23■□□□□ 0.35
Usp44Q8C2S0 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC17.23■□□□□ 0.35
Usp44Q8C2S0 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Usp44Q8C2S0 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms